PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR09G06870.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family TCP
Protein Properties Length: 267aa    MW: 29038.9 Da    PI: 6.2557
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR09G06870.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP117.22.1e-36111206397
              TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg.....kaa 91 
                       ++drhski T++g RdRR+Rls+++a+ fF+Lqd+LGfdk+skt++WLl+q+kpai+ l+ ++sss+   +++++  ++s ++ g     +++
  LPERR09G06870.1 111 FRTDRHSKIRTAQGVRDRRMRLSLDVARDFFALQDRLGFDKASKTVDWLLTQSKPAIDRLAADNSSSS---DHHHQIGAGSDKG-GgggdpQEK 200
                      689************************************************************77776...2222222222222.234443222 PP

              TCP  92 ksaaks 97 
                      ++a+ +
  LPERR09G06870.1 201 AAAHAQ 206
                      222222 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136934.922112170IPR017887Transcription factor TCP subgroup
PfamPF036341.1E-33112183IPR005333Transcription factor, TCP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000032Biological Processregulation of secondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MLPYLPNPHH FFISQEAANS HQQQHPNRTT AAAAAVFPIM PIPPPPPPPH LDHHHHQQFD  60
HFFSGGHVGS HFNNTETLEA VLLRPPRAPD PAAVPAPPPR NGGGRGRKRP FRTDRHSKIR  120
TAQGVRDRRM RLSLDVARDF FALQDRLGFD KASKTVDWLL TQSKPAIDRL AADNSSSSDH  180
HHQIGAGSDK GGGGGDPQEK AAAHAQQLEE DQLGCELGRV VRPAPVLGEY CYYDLAEMMS  240
NNGGGGGGGD DDGDGDYDDD GDFLDDI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0050932e-84AP005093.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OJ1294_G06.
GenBankAP0149652e-84AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
GenBankEU7024072e-84EU702407.1 Oryza sativa Japonica Group putative TCP transcription factor (DP1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015611514.12e-70PREDICTED: transcription factor TEOSINTE BRANCHED 1
TrEMBLA0A0D9XDM20.0A0A0D9XDM2_9ORYZ; Uncharacterized protein
STRINGBGIOSGA030744-PA9e-66(Oryza sativa Indica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40523172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18550.22e-25TCP family protein